We linked federal grants in USAspending to the nonprofits that received them, and to their IRS Form 990s. The result: a map of which agencies fund which charities, how much of their budgets Washington pays for, and who lost the most when the money moved in 2025.
For a large part of the nonprofit sector, "independent" is a technicality. Shelters, refugee agencies, health clinics, early-learning centers and overseas relief groups run on federal money — often more of it than every private donor combined. That dependence was easy to overlook in good years. In 2025 it became hard to ignore.
This analysis sets what federal agencies obligated to each nonprofit (USAspending) against what that nonprofit reports earning (its Form 990), linked by EIN. Here is what the comparison shows.
In federal grants reached 14,996 nonprofits filing full Form 990s in fiscal 2024.
3,790 nonprofits — 28% of recipients outside higher ed — have federal grant obligations equal to more than half their revenue.
Total federal grant dollars to these organizations fell from $67.7B to $60.1B in fiscal 2025.
Of 1,488 large recipients, 283 lost half or more of their federal funding in a single year.
For the median recipient, federal grant obligations equal about 20% of revenue — meaningful, but survivable. The distribution has a long, heavy right side, though: 1,499 organizations have obligations equal to three-quarters or more of their revenue. For them, a single grant decision is an existential one.
Dependency = FY2024 federal grant obligations ÷ total revenue on the organization's latest Form 990. "100%+" reflects multi-year awards obligated in one year.
Health and Human Services is by far the biggest funder of nonprofits, and it held roughly steady. The declines were concentrated: USAID fell 73%, the State Department 54%, Justice 57% and Commerce 55%. EPA fell furthest. Of its $20.7 billion in FY2024, about $18.7 billion was one-time Greenhouse Gas Reduction Fund awards to climate-finance lenders; in 2025 EPA moved to terminate those awards, and its FY2025 total was $2.4 billion. Meanwhile Education, Agriculture and Veterans Affairs sent nonprofits more.
Agency totals cover every verified recipient, including $32.1 billion to the 958 outliers left out of the $67.7 billion headline (about half of it to the climate-fund lenders), so the bars add up to more than the headline.
No part of the sector is more exposed than housing. The median housing and shelter nonprofit that receives federal grants has federal grant obligations equal to 57% of its revenue — largely HUD voucher and homelessness programs administered by nonprofits. Civil rights and advocacy groups (27%), community developers (23%) and international aid organizations (21%) follow. At the other end, the median arts and culture group that takes federal money has obligations equal to just 4% of revenue.
Where private philanthropy is thinner, federal money fills the gap. Alabama's federally funded nonprofits have obligations equal to a median 43% of their revenue; Mississippi and Hawaii follow at 34%. In New York — home to the most donors and the biggest foundations — the figure is 11%. Hover any state for its numbers.
The steepest single-year declines read like a roll call of American foreign aid: Save the Children, World Vision, Mercy Corps, CARE, FHI 360, the International Rescue Committee. Refugee resettlement agencies — Church World Service, the US Committee for Refugees and Immigrants — took heavy hits too. 27 large recipients went net negative: more was deobligated from their awards in FY2025 than was newly obligated.
Year-over-year swings partly reflect multi-year awards obligated in a single year; utility cooperatives excluded.
The Greenhouse Gas Reduction Fund handed some of the largest federal awards in history to a handful of nonprofit lenders, several only a year or two old. In fiscal 2024 they were among the best-funded nonprofits in the country. In fiscal 2025 they received no new obligations — expected for one-time awards — and EPA moved to terminate the awards already made. It is the clearest example in the data of a nonprofit's fate being decided entirely in Washington.
Several GGRF recipients were too new for their Form 990s to reflect the awards, so they are shown here rather than in dependency rankings.
Plot the 400 largest federal grant recipients by size and dependency and two worlds appear. Large health systems and research institutes sit low: federal grants are a fraction of enormous budgets. Human-services and international organizations float high — big operations that are, in practice, federal contractors with a charitable mission.
Among organizations with more than $25 million in revenue, these draw the largest share of it from federal grants. Many are household names in their fields — and several appear in the cuts above.
| # | Organization | Main funder | FY24 federal | Federal share of revenue |
|---|---|---|---|---|
| 1 | Georgia HAP Administrators GA · Housing & Shelter | HUD | $47M | 148% |
| 2 | Catholic Charities of Tennessee TN · Human Services | Health & Human Services | $37M | 141% |
| 3 | Assn. of State & Territorial Health Officials VA · Health Care | Health & Human Services | $101M | 138% |
| 4 | Ethiopian Community Development Council VA · Human Services | State Dept. | $97M | 133% |
| 5 | Catholic Charities of Louisville KY · Human Services | Health & Human Services | $92M | 131% |
| 6 | IMA World Health MD · Human Services | USAID | $66M | 120% |
| 7 | Arkansas Early Learning AR · Human Services | Health & Human Services | $32M | 119% |
| 8 | MAG America DC · Human Services | State Dept. | $91M | 117% |
| 9 | CNFA DC · International Affairs | USAID | $80M | 114% |
| 10 | Church World Service IN · International Affairs | State Dept. | $316M | 113% |
| 11 | Association of Village Council Presidents AK · Human Services | Interior | $59M | 110% |
| 12 | Improving Economies for Stronger Communities DC · International Affairs | Agriculture (USDA) | $35M | 109% |
Revenue $25M+. Shares above 100% reflect multi-year obligations; quasi-governmental entities (including the U.S. Agency for Global Media's grantee networks) and colleges excluded.
Private, nonprofit colleges and universities — the ones that file a Form 990 — collected $21.1 billion across 1,261 institutions, the most of any group. Public universities don't file 990s and aren't counted here. For large research universities the money is a modest slice of enormous budgets; the real exposure sits with the shelters, clinics and aid groups that have no endowment to fall back on.
Data from 990iQ, which links federal awards to Form 990 filings by EIN. More from 990iQ Research: CEO Pay · The Million-Dollar Club